Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_2255PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rsh:Rsph17029_4152 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (252 aa)    
Predicted Functional Partners:
Mnod_7276
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: met:M446_6011 short-chain dehydrogenase/reductase SDR.
  
  
 
0.923
Mnod_2894
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: met:M446_4912 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase.
  
  0.909
Mnod_6623
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: met:M446_4912 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase.
  
  0.909
Mnod_2895
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: met:M446_4913 short-chain dehydrogenase/reductase SDR.
  
  
 
0.904
rhmD
Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR).
     
  0.900
Mnod_2256
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB1018 transmembrane permease ABC transporter protein.
       0.773
Mnod_2257
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_A2382 ABC-type transporter, ATPase component: NitT family.
       0.773
Mnod_2258
NMT1/THI5 like domain protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; KEGG: rso:RSc1198 signal peptide protein.
       0.773
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
   
   0.620
Mnod_2254
KEGG: rfr:Rfer_2748 extracellular solute-binding protein.
       0.543
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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