STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_2285KEGG: met:M446_1629 hypothetical protein. (724 aa)    
Predicted Functional Partners:
Mnod_2284
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: met:M446_5203 fumarylacetoacetate (FAA) hydrolase.
       0.603
Mnod_2286
PFAM: thioesterase superfamily protein; KEGG: met:M446_5737 thioesterase superfamily protein.
       0.433
Mnod_2283
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: mrd:Mrad2831_3362 TRAP transporter solute receptor TAXI family protein.
       0.400
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.