Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_2291PFAM: glycoside hydrolase family 3 domain protein; KEGG: mpo:Mpop_2442 glycoside hydrolase family 3 domain protein. (733 aa)    
Predicted Functional Partners:
Mnod_5268
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: met:M446_3077 alpha amylase catalytic region.
  
  
 0.925
Mnod_3179
KEGG: met:M446_4027 alpha-L-arabinofuranosidase-like protein.
 
   
 0.717
Mnod_0647
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: azc:AZC_4468 putative transcriptional regulator.
 
   
 0.553
Mnod_1170
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: met:M446_1812 glutamate synthase (ferredoxin).
 
   
 0.545
Mnod_1602
PFAM: sugar isomerase (SIS); KEGG: met:M446_0496 sugar isomerase (SIS).
 
  
 0.528
Mnod_3023
PFAM: glycosyl transferase family 2; polysaccharide deacetylase; chitin synthase; KEGG: cak:Caul_0228 polysaccharide deacetylase.
 
   
 0.517
Mnod_0863
PFAM: glycoside hydrolase family 16; KEGG: bbt:BBta_1039 hypothetical protein.
 
  
 0.459
anmK
Protein of unknown function UPF0075; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
 
   
 0.453
Mnod_4651
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: met:M446_2627 LacI family transcription regulator.
 
   
 0.416
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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