STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Mnod_2332PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: met:M446_1991 arsenical pump membrane protein. (423 aa)    
Predicted Functional Partners:
Mnod_2331
PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_3425 major facilitator transporter.
 
     0.734
Mnod_0828
PFAM: regulatory protein ArsR; KEGG: cak:Caul_1116 ArsR family transcriptional regulator.
  
  
 0.671
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
  
 0.505
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.492
Mnod_6159
KEGG: met:M446_6929 natural resistance-associated macrophage protein.
  
   
 0.476
Mnod_4389
KEGG: met:M446_2736 hypothetical protein.
  
     0.465
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
    0.446
Mnod_5808
PFAM: natural resistance-associated macrophage protein; KEGG: bbt:BBta_7276 putative manganese transport protein.
  
   
 0.445
Mnod_5810
Chloride channel core; PFAM: CBS domain containing protein; Chloride channel core; KEGG: met:M446_5245 chloride channel core.
 
  
 0.442
Mnod_2333
KEGG: mpo:Mpop_0797 hypothetical protein.
       0.437
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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