STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_2353Hypothetical protein; KEGG: mrd:Mrad2831_6248 two component LuxR family transcriptional regulator. (50 aa)    
Predicted Functional Partners:
Mnod_2347
TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; KEGG: met:M446_2991 cytochrome c oxidase, subunit II.
       0.485
Mnod_2348
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
       0.485
Mnod_2349
KEGG: met:M446_2989 putative cytochrome c oxidase subunit III protein.
       0.485
Mnod_2350
KEGG: met:M446_2988 hypothetical protein.
       0.485
Mnod_2351
KEGG: met:M446_2987 hypothetical protein.
       0.485
Mnod_2352
KEGG: met:M446_2986 hypothetical protein.
       0.485
Mnod_2344
TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: met:M446_2994 methanol/ethanol family PQQ-dependent dehydrogenase.
       0.481
Mnod_2345
PFAM: extracellular solute-binding protein family 3; KEGG: met:M446_2993 extracellular solute-binding protein.
       0.481
Mnod_2346
PFAM: cytochrome c class I; KEGG: met:M446_2992 cytochrome c class I.
       0.481
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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