Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_2368TIGRFAM: benzoate 1,2-dioxygenase, large subunit; PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: met:M446_1324 benzoate 1,2-dioxygenase, large subunit. (449 aa)    
Predicted Functional Partners:
Mnod_2369
TIGRFAM: benzoate 1,2-dioxygenase, small subunit; PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: met:M446_1325 benzoate 1,2-dioxygenase, small subunit.
 
 0.998
Mnod_2370
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: met:M446_1326 oxidoreductase FAD/NAD(P)-binding subunit.
 
 
 0.991
Mnod_2371
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: met:M446_1327 short-chain dehydrogenase/reductase SDR.
 
 
 0.987
Mnod_2372
TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: met:M446_1328 catechol 1,2-dioxygenase.
 
  
 0.893
Mnod_2374
TIGRFAM: muconolactone delta-isomerase; PFAM: Muconolactone delta-isomerase; KEGG: met:M446_1330 muconolactone delta-isomerase.
 
  
 0.886
Mnod_2708
PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: mpt:Mpe_A0920 methanesulfonate monooxygenase, hydroxylase beta subunit.
  
 
 0.873
Mnod_2373
TIGRFAM: muconate and chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: met:M446_1329 muconate and chloromuconate cycloisomerase.
 
  
 0.846
Mnod_2367
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: met:M446_1323 LysR family transcriptional regulator.
 
     0.737
Mnod_3237
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: met:M446_6871 major facilitator transporter.
  
     0.643
Mnod_2710
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mpt:Mpe_A0921 methanesulfonate monooxygenase component; reductase.
 
  
 0.639
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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