Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_2419PFAM: type III effector Hrp-dependent outers; KEGG: pol:Bpro_0094 type III effector Hrp-dependent outers. (458 aa)    
Predicted Functional Partners:
Mnod_2420
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; PFAM: ribulose bisphosphate carboxylase large chain; KEGG: xau:Xaut_2924 ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family.
 
   
 0.953
Mnod_2421
KEGG: xau:Xaut_2925 semialdehyde dehydrogenase NAD - binding.
 
   
 0.892
Mnod_3435
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; PFAM: ribulose bisphosphate carboxylase large chain; KEGG: met:M446_1732 ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family.
 
   
 0.805
Mnod_4650
PFAM: class II aldolase/adducin family protein; KEGG: met:M446_2628 class II aldolase/adducin family protein.
 
  
 0.724
Mnod_3088
TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: azo:azo1163 putative hydroxypyruvate isomerase; Belongs to the hyi family.
 
  
 0.417
Mnod_4653
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: met:M446_2625 hydroxypyruvate isomerase; Belongs to the hyi family.
 
  
 0.413
Mnod_7275
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: met:M446_6012 NAD-dependent epimerase/dehydratase.
 
    0.412
Mnod_2422
PFAM: major facilitator superfamily MFS_1; KEGG: xau:Xaut_2926 major facilitator transporter.
       0.408
Mnod_0101
KEGG: met:M446_4739 ABC transporter substrate-binding protein.
  
     0.403
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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