STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_2420Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; PFAM: ribulose bisphosphate carboxylase large chain; KEGG: xau:Xaut_2924 ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family. (414 aa)    
Predicted Functional Partners:
Mnod_2419
PFAM: type III effector Hrp-dependent outers; KEGG: pol:Bpro_0094 type III effector Hrp-dependent outers.
 
   
 0.953
Mnod_2421
KEGG: xau:Xaut_2925 semialdehyde dehydrogenase NAD - binding.
 
   
 0.892
Mnod_3436
PFAM: type III effector Hrp-dependent outers; KEGG: met:M446_1733 type III effector Hrp-dependent outers.
 
   
 0.805
Mnod_0320
PFAM: phosphoribulokinase/uridine kinase; KEGG: met:M446_2281 phosphoribulokinase.
 
 
 0.786
Mnod_0741
KEGG: met:M446_1749 carbonic anhydrase.
    
 
 0.658
Mnod_1635
PFAM: transferase hexapeptide repeat containing protein; KEGG: met:M446_0468 hexapaptide repeat-containing transferase.
    
 
 0.658
Mnod_3074
KEGG: smd:Smed_1693 transferase hexapeptide repeat containing protein.
    
 
 0.658
Mnod_4918
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
  
 0.628
pgk
PFAM: phosphoglycerate kinase; KEGG: met:M446_6003 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.581
Mnod_4650
PFAM: class II aldolase/adducin family protein; KEGG: met:M446_2628 class II aldolase/adducin family protein.
 
  
 0.579
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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