Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Mnod_2444PFAM: Baseplate J family protein; KEGG: bbt:BBta_6583 putative bacteriophage protein. (370 aa)    
Predicted Functional Partners:
Mnod_2447
KEGG: bbt:BBta_6586 putative Mu-like prophage tail protein.
 
  
 0.978
Mnod_2443
KEGG: bph:Bphy_1869 hypothetical protein.
 
  
 0.960
Mnod_2449
KEGG: bbt:BBta_6587 putative Mu-like prophage DNA circulation protein.
 
    0.953
Mnod_0588
PFAM: GPW/gp25 family protein; KEGG: met:M446_4136 gpW/GP25 family protein.
  
 
 0.930
Mnod_1636
PFAM: Peptidoglycan-binding LysM; KEGG: met:M446_0461 peptidoglycan-binding LysM.
  
 
 0.926
Mnod_0583
TIGRFAM: phage tail protein I; PFAM: tail protein I; KEGG: met:M446_4134 phage tail protein I.
 
 
 0.908
Mnod_2454
PFAM: Mu tail sheath family protein; KEGG: bbt:BBta_6592 putative Mu-like prophage FluMu tail sheath protein.
 
  
 0.889
Mnod_2459
KEGG: rsp:RSP_2757 hypothetical protein.
  
 
 0.882
Mnod_5771
KEGG: mca:MCA2662 hypothetical protein.
 
 
 0.872
Mnod_3863
KEGG: mca:MCA2924 hypothetical protein.
 
 
 0.870
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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