STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_2449KEGG: bbt:BBta_6587 putative Mu-like prophage DNA circulation protein. (159 aa)    
Predicted Functional Partners:
Mnod_2447
KEGG: bbt:BBta_6586 putative Mu-like prophage tail protein.
 
    0.959
Mnod_2444
PFAM: Baseplate J family protein; KEGG: bbt:BBta_6583 putative bacteriophage protein.
 
    0.953
Mnod_2443
KEGG: bph:Bphy_1869 hypothetical protein.
 
    0.950
Mnod_2454
PFAM: Mu tail sheath family protein; KEGG: bbt:BBta_6592 putative Mu-like prophage FluMu tail sheath protein.
 
    0.861
Mnod_2446
KEGG: xau:Xaut_4484 Mu-like prophage protein GP45-like protein.
  
    0.819
Mnod_2451
Hypothetical protein; KEGG: mrd:Mrad2831_5175 TP901 family phage tail tape measure protein.
  
    0.809
Mnod_2450
KEGG: atc:AGR_C_798 hypothetical protein.
       0.786
Mnod_2448
KEGG: bbt:BBta_6587 putative Mu-like prophage DNA circulation protein.
       0.785
Mnod_2445
Hypothetical protein; KEGG: bbt:BBta_6584 putative bacteriophage protein, GP46-like protein.
  
    0.782
Mnod_2452
Hypothetical protein.
       0.576
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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