Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_2457KEGG: met:M446_4140 hypothetical protein. (129 aa)    
Predicted Functional Partners:
Mnod_2455
KEGG: bpt:Bpet4417 phage-like protein.
       0.773
Mnod_2456
Hypothetical protein.
       0.773
Mnod_2458
KEGG: nha:Nham_2387 hypothetical protein.
       0.773
Mnod_2454
PFAM: Mu tail sheath family protein; KEGG: bbt:BBta_6592 putative Mu-like prophage FluMu tail sheath protein.
       0.566
Mnod_2459
KEGG: rsp:RSP_2757 hypothetical protein.
       0.563
Mnod_2460
PFAM: peptidase S49; KEGG: met:M446_4143 peptidase S49.
       0.458
Mnod_2453
KEGG: bbt:BBta_6591 hypothetical protein.
       0.438
Mnod_2461
KEGG: met:M446_4144 hypothetical protein.
       0.428
Mnod_2462
TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: met:M446_4145 lambda family phage portal protein.
       0.428
Mnod_2463
PFAM: terminase GpA; KEGG: met:M446_4146 terminase GpA.
       0.428
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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