STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_2460PFAM: peptidase S49; KEGG: met:M446_4143 peptidase S49. (461 aa)    
Predicted Functional Partners:
Mnod_2462
TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: met:M446_4145 lambda family phage portal protein.
 
    0.909
Mnod_2463
PFAM: terminase GpA; KEGG: met:M446_4146 terminase GpA.
 
    0.826
Mnod_2458
KEGG: nha:Nham_2387 hypothetical protein.
 
     0.801
Mnod_2459
KEGG: rsp:RSP_2757 hypothetical protein.
 
  
 0.793
Mnod_2464
KEGG: met:M446_4147 hypothetical protein.
  
    0.743
Mnod_2461
KEGG: met:M446_4144 hypothetical protein.
       0.728
Mnod_5771
KEGG: mca:MCA2662 hypothetical protein.
 
    0.698
Mnod_3863
KEGG: mca:MCA2924 hypothetical protein.
 
    0.687
Mnod_3864
KEGG: wpi:WP0328 putative phage related protein.
 
     0.674
Mnod_5770
KEGG: wpi:WP0424 putative phage related protein.
 
     0.669
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.