STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_2487Putative deoxyribonuclease; KEGG: bid:Bind_3505 conserved hypothetical protein; putative deoxyribonuclease. (365 aa)    
Predicted Functional Partners:
Mnod_1610
TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; KEGG: met:M446_0489 double-strand break repair helicase AddA; Belongs to the helicase family. UvrD subfamily.
  
 
 0.796
Mnod_2485
KEGG: gdi:GDI3661 hypothetical protein.
  
  
 0.796
Mnod_2486
Hypothetical protein.
       0.773
Mnod_2488
KEGG: met:M446_4093 hypothetical protein.
       0.773
Mnod_2489
PFAM: MT-A70 family protein; KEGG: met:M446_4092 MT-A70 family protein; Belongs to the MT-A70-like family.
       0.773
Mnod_2490
KEGG: bvi:Bcep1808_3251 hypothetical protein.
       0.773
Mnod_7208
KEGG: met:M446_6292 hypothetical protein.
  
     0.667
Mnod_5127
PFAM: type IV pilus assembly PilZ; KEGG: met:M446_3234 type IV pilus assembly PilZ.
  
     0.602
Mnod_2491
Hypothetical protein.
       0.601
Mnod_2492
PFAM: VRR-NUC domain protein; KEGG: pol:Bpro_4970 hypothetical protein.
       0.601
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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