Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_2499Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: btr:Btr_0553 hypothetical protein. (211 aa)    
Predicted Functional Partners:
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.887
Mnod_2940
KEGG: rsh:Rsph17029_0668 hypothetical protein.
  
 
 0.630
Mnod_4233
KEGG: oan:Oant_0213 hypothetical protein.
  
 
 0.630
Mnod_2500
KEGG: met:M446_4080 hypothetical protein.
       0.548
Mnod_2501
Hypothetical protein.
       0.548
Mnod_2502
KEGG: met:M446_4079 hypothetical protein.
       0.548
Mnod_2503
Hypothetical protein.
       0.548
Mnod_2504
KEGG: met:M446_4078 hypothetical protein.
       0.548
Mnod_2505
Hypothetical protein.
       0.548
Mnod_2506
KEGG: met:M446_4076 hypothetical protein.
       0.548
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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