Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Mnod_2528KEGG: bbt:BBta_4965 hypothetical protein. (459 aa)    
Predicted Functional Partners:
Mnod_0201
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: alpha amylase 3 (IC).
  
   
 0.708
Mnod_4031
KEGG: smd:Smed_6196 NodH sulfotransferase.
  
     0.655
rplC
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
 
 0.603
rplL
Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
   
   0.529
Mnod_2529
KEGG: bbt:BBta_6382 hypothetical protein.
       0.527
rpmB
PFAM: ribosomal protein L28; KEGG: met:M446_3667 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.513
rpsI
PFAM: ribosomal protein S9; KEGG: met:M446_4611 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
    
   0.512
Mnod_1063
TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: met:M446_1425 methionine-R-sulfoxide reductase.
    
   0.512
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.512
rplQ
PFAM: ribosomal protein L17; KEGG: met:M446_0328 ribosomal protein L17.
    
   0.512
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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