STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_2565PFAM: Flp/Fap pilin component; KEGG: mlo:msl6482 pilin subunit. (53 aa)    
Predicted Functional Partners:
Mnod_2564
PFAM: Flp/Fap pilin component; KEGG: mlo:msl6482 pilin subunit.
    
 
0.949
Mnod_2824
PFAM: Flp/Fap pilin component; KEGG: met:M446_2387 Flp/Fap pilin component.
     
  0.900
Mnod_3792
PFAM: Flp/Fap pilin component; KEGG: sme:SMa1570 PilA2 pilus assembly protein.
     
  0.900
Mnod_4699
PFAM: Flp/Fap pilin component; KEGG: met:M446_2387 Flp/Fap pilin component.
     
  0.900
Mnod_7268
KEGG: met:M446_6019 hypothetical protein.
     
  0.900
Mnod_2566
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: mlo:mll6480 pilus assembly protein.
  
  
 0.537
Mnod_2826
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: met:M446_2385 Flp pilus assembly protein CpaB.
  
  
 0.537
Mnod_3790
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: sme:SMa1576 cpaB2 pilus assembly protein.
  
  
 0.537
Mnod_2568
Flp pilus assembly protein ATPase CpaE-like protein; KEGG: mlo:mll0896 septum site-determining protein.
  
  
 0.483
Mnod_2829
KEGG: met:M446_2382 response regulator receiver protein.
  
  
 0.483
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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