Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_2602PFAM: conserved hypothetical protein; KEGG: met:M446_5969 hypothetical protein. (211 aa)    
Predicted Functional Partners:
Mnod_2599
KEGG: met:M446_5975 gene transfer agent (GTA) like protein.
 
 
   0.964
Mnod_2601
PFAM: conserved hypothetical protein; KEGG: met:M446_5970 hypothetical protein.
 
 
   0.964
Mnod_2598
KEGG: mpo:Mpop_1413 hypothetical protein.
 
 
   0.948
Mnod_2600
TIGRFAM: phage cell wall peptidase, NlpC/P60 family; PFAM: NLP/P60 protein; KEGG: met:M446_5974 NlpC/P60 family phage cell wall peptidase.
 
     0.948
Mnod_2010
PFAM: conserved hypothetical protein; KEGG: met:M446_5970 hypothetical protein.
 
 
   0.848
Mnod_2012
KEGG: met:M446_5975 gene transfer agent (GTA) like protein.
 
 
   0.848
Mnod_4294
PFAM: conserved hypothetical protein; KEGG: met:M446_5970 hypothetical protein.
 
 
   0.848
Mnod_4296
KEGG: met:M446_5975 gene transfer agent (GTA) like protein.
 
 
   0.848
Mnod_6572
PFAM: conserved hypothetical protein; KEGG: met:M446_5970 hypothetical protein.
 
 
   0.848
Mnod_6574
KEGG: met:M446_5975 gene transfer agent (GTA) like protein.
 
 
   0.848
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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