Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_2607TIGRFAM: phage protein, HK97 gp10 family; KEGG: smd:Smed_1326 phage protein, HK97 GP10 family. (165 aa)    
Predicted Functional Partners:
Mnod_2606
KEGG: pde:Pden_0996 gene transfer agent.
       0.789
Mnod_2604
KEGG: pde:Pden_0999 hypothetical protein.
       0.728
Mnod_2605
KEGG: met:M446_5966 hypothetical protein.
       0.725
Mnod_2617
Hypothetical protein; KEGG: bph:Bphy_3405 HNH endonuclease.
 
     0.707
Mnod_2614
PFAM: Terminase; KEGG: sit:TM1040_1671 phage terminase.
 
     0.639
Mnod_4278
Hypothetical protein; KEGG: bph:Bphy_3405 HNH endonuclease.
 
     0.622
Mnod_1992
Hypothetical protein; KEGG: bph:Bphy_3405 HNH endonuclease.
 
     0.604
Mnod_2611
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: ppf:Pput_4113 HK97 family phage portal protein.
 
   
 0.577
Mnod_2608
TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: smd:Smed_1327 phage head-tail adaptor, putative.
  
    0.533
Mnod_2613
PFAM: peptidase U35 phage prohead HK97; KEGG: oan:Oant_0240 putative major head protein/prohead protease.
 
   
 0.513
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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