STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Mnod_2608TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: smd:Smed_1327 phage head-tail adaptor, putative. (121 aa)    
Predicted Functional Partners:
Mnod_2609
TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: bps:BPSL1139 hypothetical protein.
  
 
 0.866
Mnod_2611
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: ppf:Pput_4113 HK97 family phage portal protein.
  
 
 0.777
Mnod_2606
KEGG: pde:Pden_0996 gene transfer agent.
   
   0.721
Mnod_2610
PFAM: Collagen triple helix repeat; KEGG: hypothetical protein; K06237 collagen, type IV, alpha.
       0.714
Mnod_2612
Hypothetical protein.
       0.714
Mnod_2613
PFAM: peptidase U35 phage prohead HK97; KEGG: oan:Oant_0240 putative major head protein/prohead protease.
     
 0.590
Mnod_2615
Hypothetical protein; KEGG: nha:Nham_2021 phage terminase, small subunit, putative, P27.
     
 0.559
Mnod_2614
PFAM: Terminase; KEGG: sit:TM1040_1671 phage terminase.
       0.555
Mnod_2605
KEGG: met:M446_5966 hypothetical protein.
   
   0.550
Mnod_2607
TIGRFAM: phage protein, HK97 gp10 family; KEGG: smd:Smed_1326 phage protein, HK97 GP10 family.
  
    0.533
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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