Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_2733KEGG: met:M446_6738 hypothetical protein. (135 aa)    
Predicted Functional Partners:
Mnod_7475
KEGG: mpo:Mpop_0169 hypothetical protein.
  
     0.715
Mnod_6022
KEGG: met:M446_5801 hypothetical protein.
  
     0.700
Mnod_5502
PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: met:M446_0290 peptidase C14 caspase catalytic subunit P20.
  
    0.576
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
 
     0.570
Mnod_0494
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: met:M446_1684 endonuclease/exonuclease/phosphatase.
  
     0.535
Mnod_2732
KEGG: met:M446_6113 hypothetical protein.
       0.465
Mnod_5582
PFAM: glycosyl transferase group 1; KEGG: met:M446_5389 glycosyl transferase group 1.
  
     0.464
Mnod_2736
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpo:Mpop_4301 ABC transporter related.
  
    0.454
Mnod_2734
PFAM: periplasmic binding protein; KEGG: mex:Mext_3842 periplasmic binding protein.
       0.449
Mnod_2735
PFAM: transport system permease protein; ABC-3 protein; KEGG: mpo:Mpop_4300 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.449
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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