Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_2744KEGG: mmr:Mmar10_2480 hypothetical protein. (133 aa)    
Predicted Functional Partners:
Mnod_5845
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.731
Mnod_4882
Hypothetical protein; KEGG: acr:Acry_0615 glycosyl transferase, group 1.
  
   
 0.699
Mnod_6737
KEGG: met:M446_6498 hypothetical protein.
  
    0.657
Mnod_4307
Glycosyltransferase-like protein; KEGG: vei:Veis_0632 glycosyl transferase, family 2.
  
     0.607
Mnod_6326
PFAM: glycosyl transferase group 1; KEGG: ter:Tery_3239 tetratricopeptide TPR_2.
  
     0.549
Mnod_4336
KEGG: mex:Mext_3694 lipopolysaccharide biosynthesis protein-like protein.
  
     0.538
Mnod_7154
KEGG: met:M446_6339 hopanoid biosynthesis associated radical SAM protein HpnJ; TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnJ; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
     0.523
Mnod_2062
KEGG: mex:Mext_2422 hypothetical protein.
  
     0.492
Mnod_2282
KEGG: mex:Mext_2422 hypothetical protein.
  
     0.492
Mnod_2876
PFAM: glycosyl transferase family 2; KEGG: amc:MADE_00970 hypothetical protein.
  
     0.485
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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