STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_2775PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: met:M446_1923 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (413 aa)    
Predicted Functional Partners:
Mnod_2776
PFAM: pyruvate carboxyltransferase; KEGG: met:M446_1922 hydroxymethylglutaryl-CoA lyase.
 
 
  0.919
Mnod_2774
TIGRFAM: aconitate hydratase; PFAM: aconitate hydratase domain protein; KEGG: met:M446_5705 aconitate hydratase.
       0.674
Mnod_4905
PFAM: pyruvate carboxyltransferase; KEGG: met:M446_5092 pyruvate carboxyltransferase.
 
 
  0.663
Mnod_2777
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: met:M446_5703 major facilitator transporter.
       0.561
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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