STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_2822PFAM: TadE family protein; KEGG: met:M446_2389 TadE family protein. (193 aa)    
Predicted Functional Partners:
Mnod_2821
KEGG: met:M446_2390 hypothetical protein.
 
     0.959
Mnod_2829
KEGG: met:M446_2382 response regulator receiver protein.
 
  
 0.916
Mnod_2823
KEGG: met:M446_2388 hypothetical protein.
 
  
 0.915
Mnod_3789
KEGG: pla:Plav_0235 response regulator receiver protein.
 
  
 0.900
Mnod_2825
PFAM: peptidase A24A prepilin type IV; KEGG: met:M446_2386 peptidase A24A prepilin type IV.
 
  
 0.860
Mnod_2561
PFAM: peptidase A24A prepilin type IV; KEGG: met:M446_2386 peptidase A24A prepilin type IV.
 
  
 0.832
Mnod_3791
PFAM: peptidase A24A prepilin type IV; KEGG: nwi:Nwi_0303 peptidase A24A, prepilin type IV.
 
  
 0.830
Mnod_3781
KEGG: rpc:RPC_3708 hypothetical protein.
 
  
 0.806
Mnod_6795
PFAM: Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: met:M446_6390 TPR repeat-containing protein.
 
  
 0.797
Mnod_2824
PFAM: Flp/Fap pilin component; KEGG: met:M446_2387 Flp/Fap pilin component.
 
    0.793
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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