Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Mnod_2879PFAM: type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: met:M446_3690 type III restriction protein res subunit. (608 aa)    
Predicted Functional Partners:
Mnod_2977
KEGG: rca:Rcas_3465 hypothetical protein.
  
    0.825
Mnod_7603
KEGG: mrd:Mrad2831_6371 hypothetical protein.
  
     0.729
Mnod_0853
KEGG: met:M446_5532 hypothetical protein.
  
     0.698
Mnod_0633
Hypothetical protein; KEGG: met:M446_5531 transposase.
  
     0.652
Mnod_2244
Hypothetical protein; KEGG: met:M446_5531 transposase.
  
     0.652
Mnod_6173
Hypothetical protein; KEGG: met:M446_5531 transposase.
  
     0.652
Mnod_6406
Hypothetical protein; KEGG: met:M446_5531 transposase.
  
     0.652
Mnod_6835
Hypothetical protein; KEGG: met:M446_5531 transposase.
  
     0.652
Mnod_0557
PFAM: transposase IS66; KEGG: met:M446_5531 transposase.
  
     0.636
Mnod_3763
PFAM: peptidase M10A and M12B matrixin and adamalysin; SMART: peptidase metallopeptidase; KEGG: met:M446_4980 hypothetical protein.
  
     0.619
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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