STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_2907PFAM: protein of unknown function DUF861 cupin_3; KEGG: mlo:mll7047 hypothetical protein. (117 aa)    
Predicted Functional Partners:
Mnod_2906
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: mlo:mll7048 dehydrogenase.
 
     0.861
Mnod_2905
PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_PC0000538 putative acetyltransferase protein.
 
     0.840
Mnod_2909
PFAM: FAD dependent oxidoreductase; KEGG: smd:Smed_5599 FAD dependent oxidoreductase.
 
    0.759
Mnod_2913
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); KEGG: smd:Smed_5595 HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like).
 
     0.747
Mnod_2910
TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: azc:AZC_2033 putative dehalogenase.
 
     0.736
Mnod_2919
PFAM: FAD dependent oxidoreductase; KEGG: rle:pRL120605 putative amino acid deaminase.
 
    0.715
Mnod_2911
PFAM: GCN5-related N-acetyltransferase; KEGG: atc:AGR_L_2832 hypothetical protein.
  
     0.714
Mnod_0909
PFAM: protein of unknown function DUF861 cupin_3; KEGG: abc:ACICU_02616 hypothetical protein.
  
     0.705
Mnod_2914
PFAM: extracellular solute-binding protein family 5; KEGG: azc:AZC_2029 ABC transporter substrate binding protein.
  
     0.698
Mnod_3645
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: met:M446_5528 HAD family hydrolase.
 
     0.649
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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