Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_2929PFAM: integrase family protein; KEGG: rsp:RSP_3623 putative integrase; Belongs to the 'phage' integrase family. (351 aa)    
Predicted Functional Partners:
Mnod_2930
KEGG: mca:MCA1707 hypothetical protein.
       0.788
Mnod_2931
Hypothetical protein.
       0.773
Mnod_2932
Hypothetical protein.
       0.773
Mnod_2933
KEGG: rsp:RSP_3795 hypothetical protein.
       0.773
Mnod_2935
Hypothetical protein.
       0.484
Mnod_1708
KEGG: met:M446_4814 phosphoribosyltransferase.
   
    0.472
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.416
gpt
Phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
   
    0.416
Mnod_2462
TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: met:M446_4145 lambda family phage portal protein.
 
    0.404
Mnod_2421
KEGG: xau:Xaut_2925 semialdehyde dehydrogenase NAD - binding.
  
    0.403
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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