Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_2941PFAM: helix-turn-helix domain protein; KEGG: dac:Daci_0707 XRE family transcriptional regulator. (117 aa)    
Predicted Functional Partners:
Mnod_2940
KEGG: rsh:Rsph17029_0668 hypothetical protein.
     
 0.779
Mnod_2937
PFAM: C-5 cytosine-specific DNA methylase; KEGG: pap:PSPA7_2374 C-5 cytosine-specific DNA methylase.
       0.574
Mnod_2936
Hypothetical protein.
       0.568
Mnod_2938
KEGG: aav:Aave_1738 hypothetical protein.
       0.568
Mnod_2939
KEGG: mpo:Mpop_2742 hypothetical protein.
       0.568
Mnod_2942
Hypothetical protein.
       0.542
Mnod_2943
KEGG: pde:Pden_4087 protein of unknown function DUF847.
       0.542
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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