Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_2951PFAM: TPR repeat-containing protein; peptidase C14 caspase catalytic subunit p20; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: met:M446_0540 peptidase C14 caspase catalytic subunit P20. (784 aa)    
Predicted Functional Partners:
Mnod_5293
PFAM: WD-40 repeat protein; cytochrome c class I; KEGG: met:M446_3100 cytochrome c class I.
 
 
 0.618
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.564
Mnod_0221
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: met:M446_3163 peptidylprolyl isomerase FKBP-type.
  
 
 0.551
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.546
Mnod_2958
PFAM: Heat shock protein 70; KEGG: rso:RSp0521 chaperone transmembrane protein.
 
 0.545
Mnod_4817
KEGG: met:M446_2578 HSP70 family molecular chaperone.
 
 0.534
Mnod_2090
PFAM: Ankyrin; KEGG: met:M446_4648 ankyrin.
  
 0.511
Mnod_2960
Hypothetical protein.
  
 0.511
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.509
Mnod_1390
SMART: WD-40 repeat protein; KEGG: met:M446_0862 WD-40 repeat-containing protein.
   
 0.502
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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