Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_2962Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bja:bll2249 ubiquinone/menaquinone biosynthesis methyltransferase. (269 aa)    
Predicted Functional Partners:
Mnod_2963
KEGG: met:M446_1049 hypothetical protein.
       0.476
Mnod_4378
PFAM: Polyprenyl synthetase; KEGG: met:M446_2749 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
 
 0.443
Mnod_2961
KEGG: rle:RL1925 hypothetical protein.
       0.439
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.431
Mnod_0951
PFAM: CsbD family protein; KEGG: acr:Acry_3194 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
     0.423
Mnod_5502
PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: met:M446_0290 peptidase C14 caspase catalytic subunit P20.
  
     0.417
Mnod_5388
PFAM: monooxygenase FAD-binding; KEGG: mlo:mlr2092 hypothetical protein.
  
    0.409
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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