STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_2980PFAM: secretion protein HlyD family protein; KEGG: bja:blr7593 multidrug resistance efflux pump. (383 aa)    
Predicted Functional Partners:
Mnod_2981
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rle:RL1330 putative transmembrane efflux pump protein.
 
 
 0.929
Mnod_6435
PFAM: major facilitator superfamily MFS_1; KEGG: gdi:GDI1614 putative transporter protein.
 
 
 0.858
Mnod_6770
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: met:M446_6560 EmrB/QacA family drug resistance transporter.
 
 
 0.856
Mnod_4154
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: met:M446_4418 RND efflux system outer membrane lipoprotein.
 
 
 0.854
Mnod_7472
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_4652 drug resistance transporter EmrB/QacA subfamily.
 
 
 0.854
Mnod_0313
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_3614 EmrB/QacA family drug resistance transporter.
 
 
 0.851
Mnod_6495
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: met:M446_5878 TolC family type I secretion outer membrane protein.
 
 
 0.733
Mnod_1309
PFAM: major facilitator superfamily MFS_1; KEGG: met:M446_0923 major facilitator transporter.
 
 
 0.658
Mnod_0724
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: met:M446_1111 major facilitator transporter.
 
 
 0.577
Mnod_2979
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rec:RHECIAT_CH0001283 probable transcriptional regulator protein, LysR family.
       0.526
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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