Mnod_3040 protein (Methylobacterium nodulans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Mnod_3040

TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: bja:bll3593 hypothetical protein. (506 aa)

Predicted Functional Partners:

Mnod_3041

0.998

Mnod_3047

0.995

Mnod_3038

0.984

Mnod_3031

0.979

Mnod_3039

0.979

Mnod_3048

0.958

Mnod_3037

0.957

Mnod_3042

0.947

Mnod_3046

0.941

Mnod_3036

0.931

Your Current Organism:

Methylobacterium nodulans

NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Mnod_3031	Mnod_3036	TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: azo:azo3897 putative cytoplasmic protein,SciM.	Type VI secretion ATPase, ClpV1 family; KEGG: bja:bll3587 ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.	0.823
Mnod_3031	Mnod_3037	TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: azo:azo3897 putative cytoplasmic protein,SciM.	TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: bja:bll3588 hypothetical protein.	0.886
Mnod_3031	Mnod_3038	TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: azo:azo3897 putative cytoplasmic protein,SciM.	TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: bja:bll3590 hypothetical protein.	0.896
Mnod_3031	Mnod_3039	TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: azo:azo3897 putative cytoplasmic protein,SciM.	TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: bja:bll3591 hypothetical protein.	0.901
Mnod_3031	Mnod_3040	TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: azo:azo3897 putative cytoplasmic protein,SciM.	TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: bja:bll3593 hypothetical protein.	0.979
Mnod_3031	Mnod_3041	TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: azo:azo3897 putative cytoplasmic protein,SciM.	TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: bja:bll3594 hypothetical protein.	0.979
Mnod_3031	Mnod_3042	TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: azo:azo3897 putative cytoplasmic protein,SciM.	KEGG: bja:bll3595 hypothetical protein.	0.892
Mnod_3031	Mnod_3046	TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: azo:azo3897 putative cytoplasmic protein,SciM.	TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: bja:blr3599 hypothetical protein.	0.894
Mnod_3031	Mnod_3047	TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: azo:azo3897 putative cytoplasmic protein,SciM.	TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: bja:blr3600 hypothetical protein.	0.937
Mnod_3031	Mnod_3048	TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: azo:azo3897 putative cytoplasmic protein,SciM.	TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: bja:blr3601 hypothetical protein.	0.895
Mnod_3036	Mnod_3031	Type VI secretion ATPase, ClpV1 family; KEGG: bja:bll3587 ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.	TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: azo:azo3897 putative cytoplasmic protein,SciM.	0.823
Mnod_3036	Mnod_3037	Type VI secretion ATPase, ClpV1 family; KEGG: bja:bll3587 ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.	TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: bja:bll3588 hypothetical protein.	0.957
Mnod_3036	Mnod_3038	Type VI secretion ATPase, ClpV1 family; KEGG: bja:bll3587 ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.	TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: bja:bll3590 hypothetical protein.	0.959
Mnod_3036	Mnod_3039	Type VI secretion ATPase, ClpV1 family; KEGG: bja:bll3587 ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.	TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: bja:bll3591 hypothetical protein.	0.957
Mnod_3036	Mnod_3040	Type VI secretion ATPase, ClpV1 family; KEGG: bja:bll3587 ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.	TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: bja:bll3593 hypothetical protein.	0.931
Mnod_3036	Mnod_3041	Type VI secretion ATPase, ClpV1 family; KEGG: bja:bll3587 ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.	TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: bja:bll3594 hypothetical protein.	0.923
Mnod_3036	Mnod_3042	Type VI secretion ATPase, ClpV1 family; KEGG: bja:bll3587 ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.	KEGG: bja:bll3595 hypothetical protein.	0.871
Mnod_3036	Mnod_3046	Type VI secretion ATPase, ClpV1 family; KEGG: bja:bll3587 ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.	TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: bja:blr3599 hypothetical protein.	0.852
Mnod_3036	Mnod_3047	Type VI secretion ATPase, ClpV1 family; KEGG: bja:bll3587 ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.	TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: bja:blr3600 hypothetical protein.	0.911
Mnod_3036	Mnod_3048	Type VI secretion ATPase, ClpV1 family; KEGG: bja:bll3587 ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.	TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: bja:blr3601 hypothetical protein.	0.856

page 1 of 6

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Textmining

Co-expression

Databases

Fusion

© STRING Consortium 2026

Credits

Access

Info

About