Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_3044KEGG: bja:blr3597 hypothetical protein. (183 aa)    
Predicted Functional Partners:
Mnod_3043
TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: bja:blr3596 hypothetical protein.
 
   
 0.954
Mnod_3045
TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; KEGG: bja:blr3598 hypothetical protein.
 
     0.951
Mnod_1332
Serine/threonine protein kinase; PFAM: protein of unknown function RIO1; tyrosine protein kinase; Serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: met:M446_0913 serine/threonine protein kinase.
 
 
 
 0.920
Mnod_3042
KEGG: bja:bll3595 hypothetical protein.
 
   
 0.905
Mnod_3048
TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: bja:blr3601 hypothetical protein.
 
   
 0.903
Mnod_3046
TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: bja:blr3599 hypothetical protein.
 
     0.901
Mnod_3047
TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: bja:blr3600 hypothetical protein.
 
     0.900
Mnod_3049
TIGRFAM: type VI secretion-associated protein, BMA_A0400 family; KEGG: bja:blr3602 hypothetical protein.
 
     0.889
Mnod_3053
Serine/threonine protein kinase; PFAM: protein of unknown function RIO1; tyrosine protein kinase; protein of unknown function DUF323; Serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: met:M446_0913 serine/threonine protein kinase.
 
 
 
 0.880
Mnod_3041
TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: bja:bll3594 hypothetical protein.
 
     0.866
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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