Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3047TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: bja:blr3600 hypothetical protein. (489 aa)    
Predicted Functional Partners:
Mnod_3040
TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: bja:bll3593 hypothetical protein.
 
  
 0.995
Mnod_3046
TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: bja:blr3599 hypothetical protein.
 
  
 0.993
Mnod_3049
TIGRFAM: type VI secretion-associated protein, BMA_A0400 family; KEGG: bja:blr3602 hypothetical protein.
 
  
 0.992
Mnod_3041
TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: bja:bll3594 hypothetical protein.
 
  
 0.987
Mnod_3048
TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: bja:blr3601 hypothetical protein.
 
 
 0.987
Mnod_3038
TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: bja:bll3590 hypothetical protein.
 
  
 0.983
Mnod_3039
TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: bja:bll3591 hypothetical protein.
 
  
 0.978
Mnod_4559
PFAM: MotA/TolQ/ExbB proton channel; KEGG: met:M446_3056 MotA/TolQ/ExbB proton channel.
 
 
 0.971
Mnod_3045
TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; KEGG: bja:blr3598 hypothetical protein.
 
  
 0.959
Mnod_3050
PFAM: Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: met:M446_0912 protein serine/threonine phosphatase.
 
  
 0.949
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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