Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3051KEGG: met:M446_4453 hypothetical protein. (435 aa)    
Predicted Functional Partners:
Mnod_0715
KEGG: met:M446_1120 hypothetical protein.
 
     0.653
Mnod_1155
TIGRFAM: MJ0042 family finger-like protein; KEGG: met:M446_2196 zinc finger-domain-containing protein.
  
     0.637
Mnod_4959
KEGG: met:M446_4931 hypothetical protein.
  
     0.636
Mnod_5541
KEGG: met:M446_5158 TPR repeat-containing protein.
  
     0.634
Mnod_4528
PFAM: acyltransferase 3; KEGG: met:M446_3208 acyltransferase 3.
  
     0.631
Mnod_7203
KEGG: met:M446_6297 hypothetical protein.
 
     0.630
Mnod_5867
KEGG: met:M446_5371 putative acyl-CoA N-acyltransferase related protein.
  
     0.624
Mnod_3053
Serine/threonine protein kinase; PFAM: protein of unknown function RIO1; tyrosine protein kinase; protein of unknown function DUF323; Serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: met:M446_0913 serine/threonine protein kinase.
  
  
 0.601
Mnod_0685
KEGG: met:M446_1756 hypothetical protein.
  
     0.599
Mnod_7181
KEGG: met:M446_6312 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein.
  
     0.587
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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