Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_3073KEGG: atc:AGR_L_130 hypothetical protein. (184 aa)    
Predicted Functional Partners:
Mnod_3072
KEGG: atc:AGR_L_914GM hypothetical protein.
 
     0.949
Mnod_3076
PFAM: AMP-dependent synthetase and ligase; KEGG: mrd:Mrad2831_3008 AMP-dependent synthetase and ligase.
 
     0.851
Mnod_3075
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xau:Xaut_2807 short-chain dehydrogenase/reductase SDR.
 
    0.805
Mnod_3074
KEGG: smd:Smed_1693 transferase hexapeptide repeat containing protein.
       0.773
Mnod_3077
PFAM: Thiolase; KEGG: mrd:Mrad2831_0689 propanoyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
     0.755
Mnod_6078
PFAM: AMP-dependent synthetase and ligase; KEGG: met:M446_5364 AMP-dependent synthetase and ligase.
  
     0.657
Mnod_3078
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bbt:BBta_4095 TRAP-type C4-dicarboxylate transporter small and large permease.
 
     0.654
Mnod_3079
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: mrd:Mrad2831_3009 TRAP dicarboxylate transporter, DctP subunit.
 
     0.631
Mnod_3080
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: azc:AZC_4534 transcriptional regulator.
 
     0.599
dld
D-lactate dehydrogenase membrane binding; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family.
       0.579
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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