STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3076PFAM: AMP-dependent synthetase and ligase; KEGG: mrd:Mrad2831_3008 AMP-dependent synthetase and ligase. (545 aa)    
Predicted Functional Partners:
Mnod_1945
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: met:M446_0317 beta-ketoacyl synthase.
  
 0.954
Mnod_3077
PFAM: Thiolase; KEGG: mrd:Mrad2831_0689 propanoyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.945
Mnod_3073
KEGG: atc:AGR_L_130 hypothetical protein.
 
     0.851
Mnod_3072
KEGG: atc:AGR_L_914GM hypothetical protein.
 
     0.842
Mnod_6077
KEGG: met:M446_5365 hypothetical protein.
 
     0.784
Mnod_3081
KEGG: pde:Pden_4821 hypothetical protein.
 
     0.781
Mnod_3080
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: azc:AZC_4534 transcriptional regulator.
 
   0.740
Mnod_6744
PFAM: Thiolase; KEGG: met:M446_6598 propanoyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.730
Mnod_5227
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: met:M446_3267 respiratory-chain NADH dehydrogenase domain-containing protein.
    
 
 0.680
Mnod_3079
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: mrd:Mrad2831_3009 TRAP dicarboxylate transporter, DctP subunit.
 
     0.656
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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