Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3078PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bbt:BBta_4095 TRAP-type C4-dicarboxylate transporter small and large permease. (632 aa)    
Predicted Functional Partners:
Mnod_0979
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bbt:BBta_2121 TRAP-type C4-dicarboxylate transporter small and large permease.
 
0.987
Mnod_4386
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: met:M446_2741 TRAP C4-dicarboxylate transport system permease DctM subunit.
 
0.987
Mnod_6903
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: met:M446_0560 TRAP C4-dicarboxylate transport system permease DctM subunit.
 
0.987
Mnod_3079
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: mrd:Mrad2831_3009 TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.974
Mnod_5945
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: met:M446_5227 tripartite ATP-independent periplasmic transporter DctQ.
 
 0.966
Mnod_7254
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: met:M446_6031 tripartite ATP-independent periplasmic transporter DctQ.
 
 0.953
Mnod_0980
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bbt:BBta_2120 putative TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.894
Mnod_3433
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: met:M446_1730 TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.894
Mnod_3438
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: met:M446_1735 TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.894
Mnod_4385
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: met:M446_2742 TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.894
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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