Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3125PFAM: alanine racemase domain protein; KEGG: mrd:Mrad2831_5969 alanine racemase domain-containing protein. (393 aa)    
Predicted Functional Partners:
Mnod_3126
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: aav:Aave_0151 ornithine cyclodeaminase.
 
   
 0.823
Mnod_3127
PFAM: YheO domain protein; KEGG: bja:bll7235 hypothetical protein.
 
     0.821
Mnod_3128
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bja:bll7236 putative threonine synthase.
       0.784
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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