Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3130KEGG: mrd:Mrad2831_1390 zinc finger SWIM domain-containing protein. (554 aa)    
Predicted Functional Partners:
Mnod_3131
KEGG: mrd:Mrad2831_1391 hypothetical protein.
 
     0.961
Mnod_3129
PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: mrd:Mrad2831_1389 RNA-directed DNA polymerase.
 
     0.881
fur
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: met:M446_2230 ferric uptake regulator family protein; Belongs to the Fur family.
  
    0.644
Mnod_5586
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: met:M446_5385 ferric uptake regulator family protein; Belongs to the Fur family.
  
    0.644
Mnod_5738
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: rpc:RPC_3503 ferric uptake regulator, FUR family; Belongs to the Fur family.
  
    0.644
Mnod_2758
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bja:blr5308 anti-oxidant protein.
  
    0.643
Mnod_4002
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: met:M446_3531 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
  
    0.643
Mnod_3712
PFAM: protein of unknown function UPF0057; KEGG: met:M446_2651 hypothetical protein.
   
   0.517
Mnod_6883
TIGRFAM: caa(3)-type oxidase, subunit IV; KEGG: mex:Mext_0225 caa(3)-type oxidase, subunit IV.
    
   0.512
Mnod_3197
KEGG: afw:Anae109_4072 hypothetical protein.
  
     0.461
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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