Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3139PFAM: helix-turn-helix HxlR type; KEGG: xau:Xaut_1278 HxlR family transcriptional regulator. (117 aa)    
Predicted Functional Partners:
Mnod_2221
Transcriptional regulator, HxlR family; PFAM: regulatory protein MarR; helix-turn-helix HxlR type; KEGG: mrd:Mrad2831_5865 HxlR family transcriptional regulator.
  
     0.693
Mnod_2385
PFAM: helix-turn-helix HxlR type; KEGG: bja:bll5105 transcriptional regulatory protein.
  
     0.673
Mnod_6638
PFAM: helix-turn-helix HxlR type; KEGG: mrd:Mrad2831_1367 HxlR family transcriptional regulator.
  
     0.671
Mnod_7474
PFAM: helix-turn-helix HxlR type; KEGG: mms:mma_2400 transcriptional regulator.
  
     0.657
Mnod_1052
PFAM: PemK family protein; KEGG: swi:Swit_3386 transcriptional modulator of MazE/toxin, MazF.
   
    0.505
Mnod_3140
PFAM: isochorismatase hydrolase; KEGG: sme:SMa1821 hydrolase.
  
    0.464
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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