STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3144KEGG: bja:blr4262 hypothetical protein. (488 aa)    
Predicted Functional Partners:
Mnod_3142
PFAM: Amidohydrolase 3; KEGG: azc:AZC_3091 hypothetical protein.
 
     0.939
Mnod_3143
KEGG: bja:blr4261 hypothetical protein.
       0.814
Mnod_3140
PFAM: isochorismatase hydrolase; KEGG: sme:SMa1821 hydrolase.
 
     0.813
Mnod_3141
PFAM: protein of unknown function DUF1427; KEGG: pde:Pden_3503 protein of unknown function DUF1427.
 
     0.786
Mnod_3145
PFAM: protein of unknown function DUF1275; KEGG: bra:BRADO5122 hypothetical protein.
 
     0.692
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.