Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3147PFAM: short chain fatty acid transporter; KEGG: met:M446_4736 short chain fatty acid transporter. (489 aa)    
Predicted Functional Partners:
Mnod_2278
TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; KEGG: met:M446_1572 3-oxoacid CoA-transferase, B subunit.
 
  
 0.529
Mnod_6365
TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; KEGG: met:M446_5857 3-oxoacid CoA-transferase, B subunit.
 
  
 0.519
Mnod_2277
TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; KEGG: met:M446_1573 3-oxoacid CoA-transferase, A subunit.
 
  
 0.459
Mnod_6364
TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; KEGG: met:M446_5856 3-oxoacid CoA-transferase, A subunit.
 
  
 0.438
Mnod_3690
TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; KEGG: met:M446_5611 CitMHS family citrate/H+ symporter.
  
     0.418
Mnod_4191
PFAM: carbon starvation protein CstA; KEGG: met:M446_2942 carbon starvation protein CstA.
  
     0.403
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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