Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3161KEGG: met:M446_3912 hypothetical protein. (140 aa)    
Predicted Functional Partners:
Mnod_3158
PFAM: monooxygenase FAD-binding; KEGG: met:M446_3909 monooxygenase FAD-binding.
 
     0.881
Mnod_3159
PFAM: protein of unknown function DUF485; KEGG: met:M446_3910 hypothetical protein.
       0.756
Mnod_3160
TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: met:M446_3911 SSS family solute/sodium (Na+) symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.748
Mnod_0763
KEGG: met:M446_2052 heat repeat-containing PBS lyase.
  
     0.633
Mnod_4088
PFAM: protein of unknown function DUF927; Bifunctional DNA primase/polymerase; KEGG: swi:Swit_2196 P4 family phage/plasmid primase.
  
    0.560
Mnod_2621
PFAM: protein of unknown function DUF927; Bifunctional DNA primase/polymerase; KEGG: swi:Swit_2196 P4 family phage/plasmid primase.
  
    0.556
Mnod_4580
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: met:M446_3035 methyltransferase type 12.
 
     0.548
Mnod_0769
PFAM: CheC domain protein; KEGG: met:M446_2046 CheC, inhibitor of MCP methylation.
  
 
   0.505
Mnod_6181
KEGG: rle:pRL70101 hypothetical protein.
  
     0.479
Mnod_0852
KEGG: met:M446_5548 hypothetical protein.
  
     0.459
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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