Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Mnod_3162PFAM: major facilitator superfamily MFS_1; KEGG: azc:AZC_0966 putative transport protein. (397 aa)    
Predicted Functional Partners:
Mnod_1518
PFAM: major facilitator superfamily MFS_1; KEGG: met:M446_0657 major facilitator transporter.
  
     0.512
Mnod_3163
PFAM: regulatory protein TetR; KEGG: met:M446_3913 TetR family transcriptional regulator.
       0.501
Mnod_3158
PFAM: monooxygenase FAD-binding; KEGG: met:M446_3909 monooxygenase FAD-binding.
 
    0.495
Mnod_3161
KEGG: met:M446_3912 hypothetical protein.
       0.439
Mnod_3159
PFAM: protein of unknown function DUF485; KEGG: met:M446_3910 hypothetical protein.
       0.422
Mnod_3160
TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: met:M446_3911 SSS family solute/sodium (Na+) symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.422
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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