Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_3174Hypothetical protein. (37 aa)    
Predicted Functional Partners:
Mnod_3173
PFAM: sugar transferase; KEGG: met:M446_4032 sugar transferase.
       0.741
Mnod_3175
PFAM: Nucleotidyl transferase; KEGG: met:M446_4031 nucleotidyl transferase.
       0.427
Mnod_3176
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: met:M446_4030 NAD-dependent epimerase/dehydratase.
       0.427
Mnod_3177
KEGG: met:M446_4029 hypothetical protein.
       0.427
Mnod_3178
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: met:M446_4028 polysaccharide biosynthesis protein.
       0.427
Mnod_3179
KEGG: met:M446_4027 alpha-L-arabinofuranosidase-like protein.
       0.427
Mnod_3180
PFAM: O-antigen polymerase; KEGG: met:M446_4026 O-antigen polymerase.
       0.427
Mnod_3181
PFAM: glycosyl transferase family 2; KEGG: met:M446_4025 glycosyl transferase family protein.
       0.427
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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