Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3179KEGG: met:M446_4027 alpha-L-arabinofuranosidase-like protein. (704 aa)    
Predicted Functional Partners:
Mnod_3181
PFAM: glycosyl transferase family 2; KEGG: met:M446_4025 glycosyl transferase family protein.
 
     0.810
Mnod_3177
KEGG: met:M446_4029 hypothetical protein.
  
    0.794
Mnod_3180
PFAM: O-antigen polymerase; KEGG: met:M446_4026 O-antigen polymerase.
       0.786
Mnod_3176
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: met:M446_4030 NAD-dependent epimerase/dehydratase.
       0.782
Mnod_3175
PFAM: Nucleotidyl transferase; KEGG: met:M446_4031 nucleotidyl transferase.
       0.777
Mnod_3178
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: met:M446_4028 polysaccharide biosynthesis protein.
       0.773
Mnod_5295
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.727
Mnod_2291
PFAM: glycoside hydrolase family 3 domain protein; KEGG: mpo:Mpop_2442 glycoside hydrolase family 3 domain protein.
 
   
 0.717
Mnod_1292
KEGG: met:M446_0965 hypothetical protein.
 
   
 0.463
Mnod_5667
PFAM: extracellular solute-binding protein family 1; KEGG: vei:Veis_3451 extracellular solute-binding protein, family 1.
 
  
 0.429
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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