STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3207KEGG: tbd:Tbd_0914 hypothetical protein. (56 aa)    
Predicted Functional Partners:
Mnod_4883
PFAM: Di-haem cytochrome c peroxidase; KEGG: xau:Xaut_3462 di-haem cytochrome c peroxidase.
  
 
 0.519
Mnod_3208
PFAM: fructose-bisphosphate aldolase class-I; KEGG: bpy:Bphyt_2128 fructose-bisphosphate aldolase.
       0.507
Mnod_1397
TIGRFAM: TonB family protein; KEGG: met:M446_0855 TonB family protein.
  
    0.433
Mnod_4435
TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; KEGG: met:M446_3388 protein TolA.
  
    0.433
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.