Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3287KEGG: met:M446_4898 hypothetical protein. (270 aa)    
Predicted Functional Partners:
Mnod_3288
KEGG: met:M446_4899 hypothetical protein.
 
     0.891
Mnod_3290
PFAM: glycosyl transferase family 2; KEGG: met:M446_4901 glycosyl transferase family protein.
 
     0.863
Mnod_3285
KEGG: met:M446_4896 hypothetical protein.
       0.791
Mnod_3286
PFAM: oxidoreductase molybdopterin binding; KEGG: met:M446_4897 oxidoreductase molybdopterin binding.
       0.791
Mnod_3284
KEGG: met:M446_4895 ABC-type molybdate transport system periplasmic component-like protein.
       0.786
Mnod_3289
PFAM: Radical SAM domain protein; KEGG: met:M446_4900 radical SAM domain-containing protein.
 
     0.764
Mnod_3283
Hypothetical protein.
       0.478
Mnod_6067
PFAM: SNARE associated Golgi protein; KEGG: met:M446_5116 SNARE associated Golgi protein.
 
     0.405
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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