STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_3299PFAM: AMP-dependent synthetase and ligase; KEGG: met:M446_1304 AMP-dependent synthetase and ligase. (516 aa)    
Predicted Functional Partners:
Mnod_3296
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; cyclase/dehydrase; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; carbon monoxide dehydrogenase subunit G; KEGG: met:M446_1301 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.
 
  
  0.991
Mnod_3297
PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: met:M446_1302 molybdopterin dehydrogenase FAD-binding.
 
  
  0.989
Mnod_3298
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: met:M446_1303 2Fe-2S iron-sulfur cluster binding domain-containing protein.
    
  0.984
Mnod_1945
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: met:M446_0317 beta-ketoacyl synthase.
  
 0.954
Mnod_4788
TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: met:M446_1310 UbiD family decarboxylase; Belongs to the UbiD family.
  
  
  0.918
Mnod_3300
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: met:M446_1305 enoyl-CoA hydratase/isomerase.
 
 
 0.914
Mnod_4787
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: met:M446_1311 glucose-methanol-choline oxidoreductase.
     
 0.902
Mnod_5227
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: met:M446_3267 respiratory-chain NADH dehydrogenase domain-containing protein.
    
 
 0.680
Mnod_3301
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: met:M446_1306 major facilitator transporter.
 
     0.600
Mnod_1203
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: jan:Jann_1327 acyl-CoA dehydrogenase-like.
  
 
  0.522
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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