Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_3327TIGRFAM: ribosomal protein L31; KEGG: met:M446_4329 ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. (82 aa)    
Predicted Functional Partners:
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.989
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
 
 
 0.989
rpsP
PFAM: ribosomal protein S16; KEGG: met:M446_3682 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.987
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: met:M446_5277 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.987
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.985
rpmB
PFAM: ribosomal protein L28; KEGG: met:M446_3667 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.984
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.984
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.982
rpsI
PFAM: ribosomal protein S9; KEGG: met:M446_4611 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.981
rpmA
PFAM: ribosomal protein L27; KEGG: met:M446_4211 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.981
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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